Skullduggery Documentation
==========================

Welcome to Skullduggery! A command-line tool for automated defacing of anatomical MRI images in BIDS datasets.

**Defacing** removes identifiable facial features from anatomical neuroimaging data while preserving brain tissue, protecting participant privacy in neuroimaging studies.

.. toctree::
   :maxdepth: 2
   :caption: Command-Line Usage

   getting-started
   usage
   command-reference
   examples

.. toctree::
   :maxdepth: 2
   :caption: Development

   developer

Indices and tables
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* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`